He currently plays for FBC Melgar, wearing the number 34 shirt. He plays primarily as a Defender. He stands at 173cm tall and weighs 65kg. His current market value is estimated at 50K €.

His most recent move was a Loan from EM Deportivo Binacional to FBC Melgar on 2025-12-31.

Throughout the Peruvian Liga 1 2025, Juan Ayqque featured in 13 matches, averaging 0.6 tackles, 0.3 interceptions, and 0.2 clearances per game, while blocking 0 shots per game.